PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g19270.2
Common NameLR48_Vigan02g081500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 194aa    MW: 21570.2 Da    PI: 7.576
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g19270.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2431.1e-131767155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + ykGVr++  +g+Wv+ +r p  n+k++r++lg+f  +++Aa a++ a+++++g
  Vang06g19270.2 17 PVYKGVRQR--NGKWVSKLRQP--NNKNARVWLGTFARPDMAAVAYDVAALAFKG 67
                    68****975..6******9998..4478**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-81767IPR001471AP2/ERF domain
SMARTSM003801.0E-231881IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-171876IPR016177DNA-binding domain
PROSITE profilePS5103218.9661875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-251876IPR001471AP2/ERF domain
PRINTSPR003671.1E-61930IPR001471AP2/ERF domain
CDDcd000184.82E-231977No hitNo description
PRINTSPR003671.1E-65777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MQKRKPGRKK FHETRHPVYK GVRQRNGKWV SKLRQPNNKN ARVWLGTFAR PDMAAVAYDV  60
AALAFKGDNA SLNFPDAISS LPHLNSATSS VKAIQIAATE AAEKHFSCAE FQKLGDYLSS  120
EGGSGSFSWD EDCSELLSEE SSRKFFWDEE EVFNTPELLN SMAEALIITP PALQKGFNWV  180
GGETTVDLTL WRN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511516.11e-119PREDICTED: dehydration-responsive element-binding protein 1B-like
TrEMBLA0A0L9TVT11e-143A0A0L9TVT1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SSY51e-143A0A0S3SSY5_PHAAN; Uncharacterized protein
STRINGGLYMA10G07756.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.12e-31C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]